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EuPA Summer School 2019 on PTMs analysis,
24 - 28th June 2019, Sète, South of France


Viktoria Dorfer

Yann Guerardel
Martin Larsen 

Marie Locard-Paulet

Mariette Matondo

Karl Mechtler

Eduard Sabido

Evgenia Shishkova

Franck Vandermoere

Thematic Focus

Post-translational modifications, from sample preparation to dedicated data interpretation methods and tools


General information

Post-translational modifications of proteins are crucial for the regulation of many cellular processes and their characterization is a major application area of mass spectrometry-based proteomics. The course program will focus on PTMs characterization and cover all steps of the workflows, from sample preparation to MS acquisition and data processing tools and methods. Participants will be invited to give flash presentations and open discussions with the invited specialists will be highly encouraged.

Confirmed Speakers


Organization, Location & Contact

Previous Summer School

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  • 500 euros for EuPA members

  • 650 euros for non-EuPA members


All-inclusive formula (includes hosting, all meals and social program).

Online registration is now open.

Four EuPA travel grants are available:


In addition, six 500 euros grants are available for SFEAP members (among which three are supported by Covaris, Bruker and Thermo):


For further questions, please contact us.

Conf. Speaker

Confirmed speakers

  • Viktoria Dorfer, University of Applied Sciences Upper Austria, Austria

  • Yann Guerardel: CNRS, Université de Lille, France

  • Martin Larsen: University of Southern Denmark, Odense, Denmark

  • Marie Locard-Paulet: Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark

  • Mariette Matondo: Institut Pasteur, Paris, France

  • Karl Mechtler: Vienna Biocenter (VBC), Vienna, Austria

  • Eduard Sabido: Barcelona Institute of Science and Technology (BIST), Barcelone, Spain

  • Evgenia Shishkova: JJ Coon Lab, University of Wisconsin-Madison, Madison, USA

  • Franck Vandermoere: CNRS, Université de Montpellier, France

Prelimnary Program

Monday, June 24th, 2019

Afternoon               Arrival and Opening Remarks

                              Evgenia Shishkova - General introduction course

​                              Eduard Sabido - Targeted quantification methods for PTMs

​​​​​​​​​​​​​​​​​​​​Tuesday, June 25th, 2019

Morning                  Phosphoproteomics

                               Marie Locard-PauletPhosphoproteomics strategies from sample preparation to MS acquisition

                               Participants flash presentations session


Afternoon               Phosphoproteomics

                               Viktoria DorferData analysis and software comparisons

                               Franck Vandermoere & Mariette MatondoMS/MS spectra interpretation

                               Practical workshops on data interpretation tools


Wednesday, June 26th, 2019

Morning                  Phosphoproteomics

                               Martin Larsen – Success stories


                               Martin Larsen & Nao Yamakawa - Sample preparation, MS and software tools


Afternoon               Recreational activities


​​​​​​​​​​​​​​​​​​​​Thursday, June 27th, 2019

Morning                  Karl MechtlerCross-linking MS

                               Participants flash presentations session


Afternoon               Sponsors presentations

                               Practical workshops on data interpretation tools

Friday, June 28th, 2019

Morning                  Karl Mechtler Perspectives and future of PTMs studies

                               Round tables


Afternoon               Departure

Note: Participants will be encouraged to present their problematic in a 3-5 min short talk


Organization, location & contact

Organizing Committee:

  • Christine Carapito (ccarapito at

  • Myriam Ferro

  • Mariette Matondo

  • David Bouyssié

  • Melisande Blein-Nicolas

  • Franck Vandermoere

  • The French Young Proteomists Club board (Blandine Chazarin, Joanna Bons, Mélanie Rose, Nicolas Pythoud, Paola Cantero, Tristan Cardon)




EuPA Education Committee

Karl Mechtler


Phone: 0043-1-79044 4280



The Lazaret holiday village

La Corniche
223 Rue Pasteur Benoît
34200 Sète

See in google maps

Prev. Summer School

Previous EuPA Summer School

The 2018 EuPA School on Practical Proteomics was held in Vienna, Austria. The webpage can be found here.

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