2018 EuPA School on
Practical Proteomics in Vienna

16th to 20th of July 2018

Thematic Focus

Accurate and precise TMT Quantification

Sequencing of 6000 proteins per hour?

Advances in targeted proteomics by PRM

Cross-linking (XL-MS)

Limited proteolysis

Proteome Bioinformatics


Confirmed Speaker


Organization & Contact

Previous Summer School

Modern biology frequently applies high throughput technology-driven approaches, such as mass spectrometry-based proteomics. We offer an interactive discussion panel of and for scientists to drive development and encourage outside the standard tool-box thinking.


Confirmed speakers

  • Viktoria Dorfer, University of Applied Sciences Upper Austria, Austria

  • Sebastian Dorl, University of Applied Sciences Upper Austria, Austria

  • Kris Gevaert, VIB-UGent, Belgium

  • Wilhelm Haas, Massachusetts General Hospital; Harvard Medical School, USA

  • Christian Huber, University Salzburg; Christian Doppler Laboratory, Austria

  • Boris Macek, University Tübingen, Germany

  • Peter Mowlds, Thermo Fisher Scientific, Hemel Hempstead, UK

  • Sega Ndiaye, Thermo Fisher Scientific, France

  • Benjamin Orsburn, ThermoFisher Scientific, USA

  • Ilaria Piazza, Institute of Biochemistry; ETH Zürich, Switzerland

  • Juri Rappsilber, TU Berlin, Germany; Wellcome Centre for Cell Biology, UK

  • Sebastian Virreira Winter, Max Planck Institute of Biochemistry, Germany




Wilhelm Haas

Multiplexed Proteomics: Concept, Methods, and Potential

Interactome Dynamics in Cancer

Christian Huber

How to tune a good single- or multidimensional separation system for proteome analysis


Accurate & precise TMT quantification

Kris Gevaert

How to isolate protein N-terminal peptides (and C-terminal peptides) for terminome studies

Stories on protein biogenesis, acetylation, processing and stabilities

Christian Huber

Protein glycosylation analysis employing mass spectrometry and bioinformatics: the holy grail in therapeutic protein analysis

Benjamin Orsburn

What do I do now? Getting from PSMs back to Biology

Poster presentation and social event


Sega Ndiaye and Peter Mowlds

Lumos and Q-Exactive instrument optimization

Benjamin Orsburn

What’s wrong with my system? Procedures for rapidly diagnosing your workflow

Ilaria Piazza

Measuring structural transitions on a proteome-wide scale: Concepts and applications


Instrument optimzation


Sebastian Dorl

MSAna: A New Spectral Library Search Engine

Robert van Ling

Micro-Chip Pillar Arrays chromatography

Boris Macek

Quantitative analysis of posttranslational modifications

Viktoria Dorfer

Free PD Nodes of FH Upper Austria & IMP: An overview

Sebastian Virreira Winter

Tag it EASI! Next gen isobaric labeling for accurate multiplexed proteome quantification


EASI tag data analysis in MaxQuant


Juri Rappsilber

Protein structures and interaction by cross-linking/mass spectrometry I & II

Boris Macek

Proteomics in Analysis of Bacterial Persistence



Organization & Contact


Head of Organization

Claudia Ctortecka

E-Mail: claudia.ctortecka@imp.ac.at

Organizing Committee

  • Doppler Philipp

  • Hoi David

  • Orbán-Németh Zsuzsanna

  • Stieger Christian

EuPA Education Committee

Karl Mechtler


Phone: 0043-1-79044 4280

E-Mail: karl.mechtler@imp.ac.at

Previous EuPA Summer School


The 2017 EuPA School on Practical Proteomics was held in Split, Croatia. The webpage can be found here. Teaching material for the third practical (bioinformatics) can be found here

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